KBaSS Proteomics

This is the part of KBaSS dedicated to Proteomics.

KBaSS Proteomics External Links

  • BenchSci - A.I. Driven Antibody Search
    BenchSci is a platform that transforms published data into experiment-specific recommendations to reduce time, money and uncertainty in planning materials and methods. Unlike PubMed, Google Scholar, reagent directories and vendors, BenchSci uses machine learning to decode open- and closed-access data and present published figures with actionable insights.
  • neXtProt - Exploring the universe of human proteins
    neXtProt will be a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.
  • The Human Protein Atlas
    The Human Protein Atlas is a Swedish-based program initiated in 2003 with the aim to map all the human proteins in cells, tissues and organs using integration of various omics technologies.
  • Instruct-ERIC
    Instruct-ERIC provides open access to high-end structural biology services and techniques.
  • Proteopedia
    The free, collaborative 3D-encyclopedia of proteins & other molecules.
  • HEPP
    The Human Eye Proteome Project: Perspectives on an emerging proteome. Pubmed - Full Article
  • The Human Metabolome Database
    The HMDB is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education.
  • XCMS Online & METLIN - Resources for web-based metabolomic data processing
    XCMS is a software program that performs nonlinear retention time alignment, feature detection, and feature matching for LC/MS data.
    METLIN is a freely accessible web-based metabolite data repository.
  • SignalP - SignalP Server
    SignalP 4.1 server predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes. The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction based on a combination of several artificial neural networks.
  • Protein Atlas - A Tissue-Based Map of the Human Proteome
    This site is a summary of the current knowledge regarding the human proteome mainly achieved through antibody-based methods combined with transcriptomics analysis across all major tissues and organs of the human body.
  • CTDB - The Calmodulin Target Database
    This database contains nearly 300 sequences known to bind calmodulin.
  • US VIRN Swine Toolkit Commercial Reagent Listing
    This listing (updated 5/11) includes commercially available reagents for swine immune studies, with emphasis on recombinant cytokines, chemokines and other immune proteins and monoclonal antibodies (mAb) reactive with them and their cell surface receptors.
  • Antibodypedia
    Antibodypedia is an open-access database of publicly available antibodies against human protein targets.
  • The Antibody Registry
    The Antibody Registry was created to give researchers a way to universally identify antibodies used in in the course of their research.
  • BioPlex
    The BioPlex (biophysical interactions of ORFeome-based complexes) network is the result of creating thousands of cell lines with each expressing a tagged version of a protein from the ORFeome collection.
  • The Eukaryotic Linear Motif resource for Functional Sites in Proteins
    This computational biology resource mainly focuses on annotation and detection of eukaryotic linear motifs (ELMs) by providing both a repository of annotated motif data and an exploratory tool for motif prediction.
  • Disprot: the database of protein disorder
    DisProt is a community resource annotating protein sequences for intrinsically disorder regions from the literature.
  • IntAct Molecular Interaction Database
    IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available.
  • The Proteome Landscape of the Kingdoms of Life
    This webservice offers easy access to the data of the "proteome landscape of life" project.
  • The Antibody Guide
    Antibodyguide helps researchers find the right antibodies for their work, making scientific research more efficient and less frustrating.