KBaSS Proteomics

This is the part of KBaSS dedicated to Proteomics.

KBaSS Proteomics External Links

  • neXtProt - Exploring the universe of human proteins
    neXtProt will be a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data.
  • HEPP
    The Human Eye Proteome Project: Perspectives on an emerging proteome. Pubmed - Full Article
  • The Human Metabolome Database
    The HMDB is a freely available electronic database containing detailed information about small molecule metabolites found in the human body. It is intended to be used for applications in metabolomics, clinical chemistry, biomarker discovery and general education.
  • PrabiG
    PrabiG is the Grenoble portal of the Prabi (Rhône-Alpes Bioinformatics Center) platform. It aims at providing the scientific community with tools and data related to proteomics and metabolomics.
  • XCMS Online & METLIN - Resources for web-based metabolomic data processing
    XCMS is a software program that performs nonlinear retention time alignment, feature detection, and feature matching for LC/MS data.
    METLIN is a freely accessible web-based metabolite data repository.
  • SignalP - SignalP Server
    SignalP 4.1 server predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes. The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction based on a combination of several artificial neural networks.
  • Protein Atlas - A Tissue-Based Map of the Human Proteome
    This site is a summary of the current knowledge regarding the human proteome mainly achieved through antibody-based methods combined with transcriptomics analysis across all major tissues and organs of the human body.
  • CTDB - The Calmodulin Target Database
    This database contains nearly 300 sequences known to bind calmodulin.
  • US VIRN Swine Toolkit Commercial Reagent Listing
    This listing (updated 5/11) includes commercially available reagents for swine immune studies, with emphasis on recombinant cytokines, chemokines and other immune proteins and monoclonal antibodies (mAb) reactive with them and their cell surface receptors.
  • Antibodypedia
    Antibodypedia is an open-access database of publicly available antibodies against human protein targets.
  • The Antibody Registry
    The Antibody Registry was created to give researchers a way to universally identify antibodies used in in the course of their research.
  • BioPlex
    The BioPlex (biophysical interactions of ORFeome-based complexes) network is the result of creating thousands of cell lines with each expressing a tagged version of a protein from the ORFeome collection.